Preparing Your Cannabis Business for a Financial Audit
- Marko Glisic
- Mar 25
- 4 min read
Updated: Apr 9

My years at the intersection of cannabis and finance have taught me how thoroughly-executed audits differentiate thriving businesses from those merely surviving in our highly regulated industry. The transition from leading multi-billion dollar audits at Deloitte to building specialized audit frameworks for cannabis operators provided me with unique insights into preparing cannabis businesses for financial scrutiny—an inevitable part of growth and success in this rapidly maturing market.
Cannabis businesses frequently express anxiety when discussing audit preparation, which makes complete sense considering our industry's unique hurdles: banking restrictions, tax code limitations like 280E, and constantly changing state-specific compliance requirements that challenge even the most meticulous operators. Proper preparation and robust systems can transform an audit from a stress-inducing ordeal into a valuable opportunity to strengthen your business foundation and accelerate sustainable growth.
Money Management That Impresses Auditors
Cash management constitutes perhaps the most distinctive characteristic of cannabis businesses. While electronic payments dominate other sectors, cannabis operators handle substantial physical currency, creating unique audit challenges requiring specialized controls. One California-based vertically integrated client approached us with $1.1 million in unexplained cash discrepancies, leading to investor threats of legal action and placing the company at substantial risk during potential audits.
The remedy requires unwavering discipline: implementing detailed cash logs, conducting regular safe counts with dual verification, establishing reconciliation procedures matching point-of-sale data to physical currency, and ensuring clear accountability among staff handling cash. Form 8300 requirements for cash transactions exceeding $10,000 demand particular attention—IRS penalties for non-compliance might reach $25,000 per occurrence, and companies without proper tracking and reporting protocols potentially face liabilities totaling millions.
Cannabis retailers must conduct daily reconciliation between POS systems and physical counts, investigating discrepancies immediately rather than allowing accumulation over time. Effective cash handling procedures require thinking like an auditor: documenting everything, establishing clear separation of duties among staff, and creating processes making fraud or theft difficult without detection.
Inventory Systems That Withstand Scrutiny
Inventory management represents another critical area where cannabis businesses need specialized preparation, extending well beyond requirements for traditional retail or manufacturing. Effective cannabis inventory systems track products throughout their entire lifecycle—cultivation through processing, manufacturing, testing, and final sale—with meticulous documentation at every transfer point.
One multi-state operator we worked with experienced consistent inventory shrinkage exceeding $800,000 annually, creating an immediate red flag triggering deeper scrutiny during audits. Through implementing regular cycle counts, batch tracking protocols, and reconciliation procedures between state tracking systems and internal inventory records, we eliminated these discrepancies completely, preparing them for clean audits while significantly enhancing profitability.
Strong inventory systems enable tracking physical counts against system records across all inventory types: plants, bulk materials, work-in-process, and finished goods. During audits, explaining variances becomes necessary, making established acceptable variance thresholds and investigation procedures valuable precautions. Documentation of destruction events, testing failures, and other approved shrinkage holds particular importance, as unexplained inventory losses typically attract focused auditor attention in cannabis businesses.
Strategic Cost Allocation That Maximizes Deductions
Cost accounting across operational departments, though frequently overlooked, holds critical importance in cannabis audit preparation. IRS Code 280E imposes severe limitations on deductible expenses, making accurate cost allocation between production activities (potentially deductible) and selling activities (non-deductible) essential.
The 471 tax strategies we've implemented have generated millions in tax deductions for clients through proper identification and allocation of costs to appropriate departments while ensuring those allocations withstand audit scrutiny. This approach transcends basic accounting, requiring systems tracking labor hours by department, allocating shared expenses through defensible methodologies, and maintaining comprehensive documentation for all allocation rationales.
Vertically integrated businesses need accounting systems capable of producing department-specific profit and loss statements for cultivation, processing, manufacturing, distribution, and retail operations. Each product requires fully documented cost flow from input materials through processing into finished goods inventory. Auditor requests for support regarding cost allocations will come—having clear reports and documentation ready to substantiate your accounting treatments proves invaluable.
Compliance Documentation That Opens Doors
Operational documentation supporting financial records extends audit preparation beyond numbers alone. Cannabis industry auditors need to understand both financial performance and whether your business maintains compliance infrastructure necessary for legal operation in this regulated environment.
Organized records of licenses, permits, compliance inspections, testing results, and regulatory correspondence demonstrate operational legitimacy. Standard operating procedures for compliance-critical functions like inventory management, cash handling, waste disposal, and product testing should be thoroughly documented. Creating systems tracking regulatory changes affecting your business, along with documentation showing implementation of required modifications, demonstrates proactive compliance.
Businesses contemplating future capital raises or acquisition opportunities find this documentation particularly valuable. Our clients have successfully exited businesses at valuations exceeding $60 million through comprehensive financial and operational documentation meeting intense due diligence requirements, which extend considerably beyond standard audit expectations.
Building Your Audit-Ready Cannabis Operation
The cannabis industry continues maturing from emerging sector toward established business category, raising expectations for financial governance and audit preparedness. While preparing thoroughly might seem overwhelming, implementing robust controls around cash, inventory, cost accounting, and operational compliance will transform business operations and create a foundation for sustainable growth in this dynamic industry.
Preparation constitutes an ongoing process of building systems and controls becoming integral to your business culture, not a last-minute scramble weeks before auditors arrive. Through comprehensive preparation, your next audit can showcase operational strength rather than trigger crisis management.